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Leveraging Large-Scale Distributed Systems for Massive Biological Datasets

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posted on 2013-07-26, 00:00 authored by Andrew David Thrasher
The tremendous increase in available data in bioinformatics necessitates computational approaches which leverage a wide variety of computing resources. These systems must be easy for the user and add minimal overhead for developers. Developers must also take advantage of these systems and build tools and applications which are highly portable and have low overheads while being capable of running on a large variety of resources. To this end, we present multiple applications and modifications with lessons learned and guidelines for development. Additionally these applications provide useful modifications to the community. Finally we provide a use case which leverages distributed computing and without which, would be computationally infeasible.

History

Date Modified

2017-06-05

Defense Date

2013-07-05

Research Director(s)

Dr. Scott Emrich

Committee Members

Dr. Adam Phillippy Dr. Michael Pfrender Dr. Douglas Thain

Degree

  • Doctor of Philosophy

Degree Level

  • Doctoral Dissertation

Language

  • English

Alternate Identifier

etd-07262013-115037

Publisher

University of Notre Dame

Program Name

  • Computer Science and Engineering

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