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  • Creator(s):
    Rob Wieck
    Description:

    Commonly known as the yellow fever mosquito, Aedes aegypti invaded Madeira Island in 2005 and was the vector of the island’s first dengue outbreak in 2012. We have studied genetic variation at 16 microsatellites and 2 mitochondrial DNA genes in temporal samples of Madeira Island, in order to assess the origin of the invasion and the population structure of this mosquito vector.

    Date Created:
    2018-07-24
  • Creator(s):
    Rob Wieck
    Description:

    Evaluation of insecticide resistance in Aedes aegypti between 1996-2016 in Brazil.

    Date Created:
    2018-06-06
  • Creator(s):
    Kevin Roche
    Description:

    This record contains all data used in the experimental study, “Modeling benthic vs. hyporheic uptake in unshaded streams with varying substrates,” presently in review for the journal JGR-Biogeosciences.

    Date Created:
    2018-05-29
  • Creator(s):
    Jonathan Hauenstein, Alan Liddell, Yi Zhang
    Description:

    Standard interior point methods in semidefinite programming track a solution path for a homotopy defined by a system of polynomial equations. By viewing this in the context of numerical algebraic geometry, we are able to employ techniques to handle various cases which can arise. Adaptive precision path tracking techniques can help navigate around ill-conditioned areas. When the optimizer is singular with respect to the first-order optimality conditions, endgames can be used to efficiently and…

    Date Created:
    2018-04-10
  • Creator(s):
    Indrajith D Nissanka, David H Richter
    Description:

    This set of data set include the required data to re generate the figures given in the manuscript “Parameterized vertical concentration for aerosols in marine atmospheric boundary layer”

    Date Created:
    2018-04-09
  • Creator(s):
    Peter Ivie, Douglas Thain
    Description:

    Welcome to the preserved archive of workflows in the paper submitted to Concurrency & Computation: Practice & Experience entitled “Using PRUNE to reproducibly manage the data requirements in computational science.”

    Date Created:
    2018-03-13
  • Creator(s):
    Jonathan Hauenstein
    Description:

    A common problem when analyzing models, such as a mathematical modeling of a biological process, is to determine if the unknown parameters of the model can be determined from given input-output data. Identifiable models are models such that the unknown parameters can be determined to have a finite number of values given input-output data. The total number of such values over the complex numbers is called the identifiability degree of the model. Unidentifiable models are models such that th…

    Date Created:
    2018-03-09
  • Creator(s):
    Samantha Sherman, Jonathan Hauenstein
    Description:

    Computational tools in numerical algebraic geometry can be used to numerically approximate solutions to a system of polynomial equations. If the system is well-constrained (i.e., square), Newton’s method is locally quadratically convergent near each nonsingular solution. In such cases, Smale’s alpha theory can be used to certify that a given point is in the quadratic convergence basin of some solution. This was extended to certifiably determine the reality of the corresponding sol…

    Date Created:
    2018-03-08
  • Creator(s):
    Margaret Regan, Jonathan Hauenstein
    Description:

    A common computational problem is to compute topological information about a real surface defined by a system of polynomial equations. Our software, called polyTop, leverages numerical algebraic geometry computations from Bertini and Bertini_real with topological computations in javaPlex to compute the Euler characteristic, genus, Betti numbers, and generators of the fundamental group of a real surface. Several examples are used to demonstrate this new software.

    Date Created:
    2018-03-02
  • Creator(s):
    Edward Beatty
    Description:

    The Mexican patent database collects data on all patents issued in Mexico from roughly 1840 to the onset of the Mexican Revolution in 1911, totaling approximately thirteen thousand five hundred (13,500) discrete patent records. At present, this is the most comprehensive record of patents issued by Mexican governments during the nineteenth century. There is no single archival or published source that contains a comprehensive list or data on Mexican patents issued over the course of the long …

    Date Created:
    2018-01-29
  • Creator(s):
    Rob Wieck
    Description:

    12 microsatellite markers 14,888 single nucleotide polymorphisms (SNPs) to empirically estimate the effective population size (Ne) in Aedes aegypti, the major vector of yellow fever, dengue, chikungunya, Zika virus. Temporal sampling methods were used to estimate Ne on a global dataset made up of 46 samples of Ae. aegypti that included multiple time points from 17 widely distributed geographic localities. This data has been processed and imported into VectorBase’s Population Biology resou…

    Date Created:
    2018-01-05
  • Creator(s):
    Sunny Boyd
    Description:

    Mate choice strategies in a spatially-explicit model environment

    Giordano B. S. Ferreira1, Matthias Scheutz1, and Sunny K. Boyd2 1Department of Computer Science, Tufts University, Medford, MA 02155, USA Matthias.scheutz@tufts.edu and Giordano.Ferreira@tufts.edu 2Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA Boyd.1@nd.edu (Corresponding author; phone: 574-631-5021; fax: 574-631-7413)

    Keywords: mate choice, decision-making, agent-based modeling, f…

    Date Created:
    2017-12-14