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Stratification of left-side and right-side colon cancer

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posted on 2017-08-01, 00:00 authored by Amanda B. Hummon, Steven Buechler
Compositions/methods for employing fresh-frozen or FFPE colon cancer tissue in left side colon cancer (LCC) and right-side colon cancer (RCC) disease patients for risk of relapse assessment/stratification is provided (3 strata and a 4 strata methodology). An RCC gene panel of 4 genes (FAM69A, CDX2, FAM84A, ITGA3), and 9 genes (FAM69A, CDX2, ITGA3, FAM84A, ITPRIP, RAB3B, SMAD3, PCSK5, MMP28), is provided. An LCC gene panel of 4 genes (NOX4, WNT5A, MMP3, IBSP), and a 9 genes (MMP3, WINT5A, NOX4, IBSP, SLC16A6, CYPIBI, TFAP2C, MATN3, ANKRD6), is provided. A microchip-based clinical tool, and a kit including a microchip, is presented. The invention also describes a computer-implemented method for assessing relative risk of relapse in LCC and/or RCC disease. An individual patient scoring method that presents a continuous stratification score useful in the post-surgical colon cancer management of LCC and/or RCC patient is also presented.

History

Patent Number

US 9580756 B2

Other Application

14/209,266

Inventor

Steven Buechler Amanda B. Hummon

Inventor from Local Institution

Steven Buechler Amanda B. Hummon

Assignee

University of Notre Dame du Lac

Date Modified

2017-08-01

Language

  • English

Claims

7

Prior Publication Number

US 20150072878 A1

Publisher

U.S. Patent and Trademark Office

Cooperative Patent Classification Codes

C12Q 1/6886 (20130101); G06F 19/70 (20130101); C12Q 2600/106 (20130101); C12Q 2600/158 (20130101); C12Q 2600/112 (20130101); G06F 19/3431 (20130101)

Contributor

Steven Buechler|Amanda B. Hummon

International Patent Classification Codes

C12Q 1/68 (20060101); G06F 19/00 (20110101)

Additional Groups

  • Applied and Computational Mathematics and Statistics
  • Chemistry and Biochemistry

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